Code

Develop#121

Code

Merged

pnrobinson merged 32 commits intomainmonarch-initiative/pyphetools:mainfrom developmonarch-initiative/pyphetools:developCopy head branch name to clipboardMay 28, 2024

+1,261,225-457

Commits

Commits on Mar 25, 2024

• Start working on vrs members.

  ielis

  committed
  8231038

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Commits on Mar 27, 2024

• Implement IndefiniteRange, DefiniteRange, SimpleInterval, and CytobandInterval.

  ielis

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• Implement DerivedSequenceExpression, RepeatedSequenceExpression and ChromosomeLocation.

  ielis

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• Implement SequenceLocation.

  ielis

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Commits on Mar 28, 2024

• Implement Allele.

  ielis

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• Implement Haplotype and VariationSet.

  ielis

  committed
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Commits on Mar 31, 2024

• Fix oneof call field in GenomicInterpretation.

  ielis

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• Implement CopyNumber.

  ielis

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• Implement Variation.

  ielis

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• Implement VariationSet.Member.

  ielis

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  6bdf7e5

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• Enable Variation in VariationDescriptor.

  ielis

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Commits on Apr 1, 2024

• Finalize VRS.

  ielis

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• Add documentation.

  ielis

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  dcd87d8

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• Merge pull request #99 from monarch-initiative/finalize-vrs-for-pp-v202

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  ielis

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Commits on Apr 4, 2024

• Adding check for existing template.

  KyranWissink

  committed
  8424c8d

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• Merge pull request #106 from monarch-initiative/append

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  pnrobinson

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Commits on Apr 13, 2024

• adding data of curation for HPOA

  pnrobinson

  committed
  cbd340a

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• adding data of curation for HPOA

  pnrobinson

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Commits on Apr 14, 2024

• fixing datetime

  pnrobinson

  committed
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Commits on Apr 15, 2024

• hpoa output

  pnrobinson

  committed
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Commits on May 7, 2024

• Adding installation guide.

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  cmungall

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Commits on May 8, 2024

• Put virtual environment into venv.

  ielis

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• Suggest updating pip before installation.

  ielis

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• Generate FBN1 phenopackets using today's phenopacket-store state.

  ielis

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• Update *FBN1* notebook names.

  ielis

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Commits on May 20, 2024

• Added ability to use FastHPOCR instead of exact string matching. Refactored HPOConceptRecognizer inheritance. Added data and tests.

  tudorgroza

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Commits on May 21, 2024

• triggered rebuild

  pnrobinson

  committed
  ee0ebc8

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• Merge pull request #116 from monarch-initiative/feature/use-fasthpocr

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  pnrobinson

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  9bf3b76

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• Drop the GitHub action that runs selected phenopacket-store notebooks.

  ielis

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Commits on May 22, 2024

• Merge branch 'refs/heads/develop' into issue-114-fix

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  ielis

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  f5a7c56

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• Merge pull request #118 from monarch-initiative/issue-114-fix

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  ielis

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Commits on May 28, 2024

• Merge branch 'main' into develop

  pnrobinson

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