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feat: use json string to store additional metadata in fasta headers #101

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merged 1 commit into from
Jan 3, 2025
Merged

feat: use json string to store additional metadata in fasta headers #101

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17 changes: 16 additions & 1 deletion packages/pangraph/src/pangraph/pangraph_block.rs
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Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
use crate::io::json::{json_write_str, JsonPretty};
use crate::io::seq::reverse_complement;
use crate::pangraph::edits::Edit;
use crate::pangraph::pangraph::Pangraph;
Expand All @@ -10,6 +11,7 @@ use getset::{CopyGetters, Getters};
use maplit::btreemap;
use schemars::JsonSchema;
use serde::{Deserialize, Serialize};
use serde_json::json;
use std::collections::{BTreeMap, BTreeSet};
use std::hash::Hash;

Expand Down Expand Up @@ -154,7 +156,20 @@ impl PangraphBlock {
let path_name = &graph.paths[&node.path_id()].name().as_ref().unwrap();
let (start, end) = node.position();
let strand = node.strand();
format!("{node_id} {path_name}-{block_id} [{start}-{end}|{strand}]")

let meta = json_write_str(
&json! ({
"path_name": path_name,
"block_id": block_id,
"start": start,
"end": end,
"strand": strand,
}),
JsonPretty(false),
)
.unwrap();

format!("{node_id} {meta}")
}
RecordNaming::Path => {
let path_id = graph.nodes[node_id].path_id();
Expand Down
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