Handle dirty local module repos by force checkout of commits and branches if needed #6228
mashehuAnnotations
19 warnings
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Run test_params_file.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_licenses.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_test_utils.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_cli.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_create_logo.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_bump_version.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_lint_utils.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_list.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_refgenie.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_sync.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_create.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_utils.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_download.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_launch.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_schema.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_lint.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_modules.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_subworkflows.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run test_components.py with Python 3.11 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@dccbf847604cbc34610280d79644a02035d924ac. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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coverage_test_bump_version.py
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coverage_test_cli.py
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coverage_test_components.py
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coverage_test_create.py
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coverage_test_create_logo.py
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coverage_test_download.py
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coverage_test_launch.py
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coverage_test_licenses.py
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coverage_test_lint.py
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coverage_test_lint_utils.py
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coverage_test_list.py
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coverage_test_modules.py
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coverage_test_params_file.py
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coverage_test_refgenie.py
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coverage_test_schema.py
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coverage_test_subworkflows.py
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coverage_test_sync.py
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coverage_test_test_utils.py
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coverage_test_utils.py
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