fixes #17

pnnl · Oct 31, 2018 · 3929283 · 3929283
1 parent d01de36
commit 3929283
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/hundo/Snakefile b/hundo/Snakefile
@@ -247,7 +247,7 @@ def md5(fname):
 
 PROTOCOL_VERSION = subprocess.check_output("hundo --version", shell=True).decode("utf-8").strip()
 if config.get("workflow") == "download":
-    SAMPLES, OMITTED = {"placeholder": {"r1": "placeholder", "r2": "placeholder"}}
+    SAMPLES, OMITTED = ({"placeholder": {"r1": "placeholder", "r2": "placeholder"}}, dict())
 else:
     SAMPLES, OMITTED = get_sample_files(
         config.get("fastq_dir"), config.get("prefilter_file_size", 100000)

diff --git a/hundo/__init__.py b/hundo/__init__.py
@@ -1 +1 @@
-__version__ = "1.2.1"
+__version__ = "1.2.3"
diff --git a/hundo/hundo.py b/hundo/hundo.py
@@ -192,7 +192,7 @@ def get_snakefile():
     help="use at most this many cores in parallel",
 )
 @click.option(
-    "--rd",
+    "-rd",
     "--reference-database",
     default="silva",
     type=click.Choice(["silva", "greengenes", "unite"]),