fixes gzip support when counting small files

pnnl · Jun 25, 2018 · b053395 · b053395
1 parent 5019841
commit b053395
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/hundo/Snakefile b/hundo/Snakefile
@@ -35,9 +35,10 @@ def count_sequences(filename):
         import gzip
 
         f = gzip.open(filename, "rb")
+        f_gen = _make_gen(f.read)
     else:
         f = open(filename, "rb")
-    f_gen = _make_gen(f.raw.read)
+        f_gen = _make_gen(f.raw.read)
     return sum(buf.count(b'\n') for buf in f_gen) / 4
 
 

diff --git a/hundo/__init__.py b/hundo/__init__.py
@@ -1 +1 @@
-__version__ = "1.1.17"
+__version__ = "1.1.18"