Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

A simple test report for isoSeq3 of PacificBiosciences

MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing

Iso-seq and Kallisto integration

SIMulator for Long read transcriptome Analysis with RNA DecaY model

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

A snakemake workflow to automate the IsoSeq3 pipeline from Pacific Biosciences

This is the repository for the Dockerfile made to containerize and make the package available for the tools in https://github.com/Magdoll/cDNA_Cupcake. The package is automatically built and pushed upon any push to the repository using GitHub actions.

MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing