A Python library to visualize and analyze long-read transcriptomes

De novo clustering of long transcript reads into genes

De novo construction of isoforms from long-read data

Long RNA-seq analysis workflow

Clair3-RNA - a long-read small variant caller for RNA sequencing data

A collection of scripts for our PacBio paper

A collection of scripts for our PacBio paper

De novo clustering of long transcript reads into genes

Genome assembly steps (Haliotis asinina)

Iso-seq and Kallisto integration

A Snakemake pipeline to go from raw .subreads.bam PacBio Iso-Seq to assembled mRNA isoforms (FASTA format)

Build highly accurate transcripts from long-read RNA data

Process PacBio Sequel and Sequel II subread BAMs into CCS FASTQ files

Inter-sample analysis of SQANTI classifications