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Update README.md (#295)
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anna-grim authored Jan 21, 2025
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GraphTrace is a Python library that leverages machine learning to automatically correct splits in fragmented neuron segmentations from whole-brain images. A demo Jupyter notebook is provided to showcase the process: it loads fragmented neuron segments from a predicted segmentation and corrects them using GraphTrace. You can also use the provided code to train a deep learning model and evaluate it against ground truth data.

<p>
<img src="imgs/result.png" width="1200" alt="Example of before and after run obtained with GraphTrace">
<img src="imgs/result.png" width="900" alt="Example of before and after run obtained with GraphTrace">
</p>

Briefly describe inference pipeline, to do...
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- Graph Neural Network (GNN) Inference: Predicts whether to accept or reject proposals based on the generated features and graphical structure.
- Graph Update: Integrates inference results by merging fragments corresponding to an accepted proposal.

<p>
<img src="imgs/pipeline.png" width="900" alt="Visualization of split correction pipeline. See Inference section for description of each step.>
</p>

## Inference

To do...
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