294: Improve breaks and bins for probability chart

294-basic-ridgeline-plot.Rmd

@@ -109,7 +109,9 @@ data <- data %>%
 data %>%
   mutate(text = fct_reorder(text, value)) %>%
   ggplot( aes(y=text, x=value,  fill=text)) +
-    geom_density_ridges(alpha=0.6, stat="binline", bins=20) +
+    geom_density_ridges(alpha=0.6, stat="binline", binwidth=5) +
+    scale_x_continuous(breaks=seq(0,100,25)) +
+    scale_y_discrete(expand=expansion(add=c(0,1))) +
     theme_ridges() +
     theme(
       legend.position="none",

libs/header-attrs-2.6/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});

libs/navigation-1.1/codefolding.js

@@ -17,26 +17,26 @@ window.initializeCodeFolding = function(show) {
   var currentIndex = 1;
 
   // select all R code blocks
-  var rCodeBlocks = $('pre.r, pre.python, pre.bash, pre.sql, pre.cpp, pre.stan, pre.julia');
+  var rCodeBlocks = $('pre.r, pre.python, pre.bash, pre.sql, pre.cpp, pre.stan, pre.julia, pre.foldable');
   rCodeBlocks.each(function() {
 
     // create a collapsable div to wrap the code in
     var div = $('<div class="collapse r-code-collapse"></div>');
-    if (show)
-      div.addClass('in');
+    var showThis = (show || $(this).hasClass('fold-show')) && !$(this).hasClass('fold-hide');
+    if (showThis) div.addClass('in');
     var id = 'rcode-643E0F36' + currentIndex++;
     div.attr('id', id);
     $(this).before(div);
     $(this).detach().appendTo(div);
 
     // add a show code button right above
-    var showCodeText = $('<span>' + (show ? 'Hide' : 'Code') + '</span>');
+    var showCodeText = $('<span>' + (showThis ? 'Hide' : 'Code') + '</span>');
     var showCodeButton = $('<button type="button" class="btn btn-default btn-xs code-folding-btn pull-right"></button>');
     showCodeButton.append(showCodeText);
     showCodeButton
         .attr('data-toggle', 'collapse')
         .attr('data-target', '#' + id)
-        .attr('aria-expanded', show)
+        .attr('aria-expanded', showThis)
         .attr('aria-controls', id);
 
     var buttonRow = $('<div class="row"></div>');

libs/tocify-1.9.1/jquery.tocify.css

@@ -11,8 +11,6 @@
     margin-left: 2%;
     position: fixed;
     border: 1px solid #ccc;
-    webkit-border-radius: 6px;
-    moz-border-radius: 6px;
     border-radius: 6px;
 }
 
@@ -45,11 +43,15 @@
 .tocify-subheader .tocify-subheader {
     text-indent: 30px;
 }
-
-/* Further indents third level subheader elements. You can continue this pattern if you have more nested elements. */
 .tocify-subheader .tocify-subheader .tocify-subheader {
     text-indent: 40px;
 }
+.tocify-subheader .tocify-subheader .tocify-subheader .tocify-subheader {
+    text-indent: 50px;
+}
+.tocify-subheader .tocify-subheader .tocify-subheader .tocify-subheader .tocify-subheader {
+    text-indent: 60px;
+}
 
 /* Twitter Bootstrap Override Style */
 .tocify .tocify-item > a, .tocify .nav-list .nav-header {

libs/tocify-1.9.1/jquery.tocify.js

@@ -386,13 +386,13 @@
 
           item.append($("<a/>", {
 
-            "text": self.text()
+            "html": self.html()
 
           }));
 
         } else {
 
-          item.text(self.text());
+          item.html(self.html());
 
         }